PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G054500.1.p
Common NameSETIT_012530mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 116aa    MW: 12753.9 Da    PI: 8.0424
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G054500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.4e-17301041086
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         + k + +++p  f++++g+ +++++tl+   +s  sW+v++    k+ ++  ++GWk+F+++n +kegD+++F +++
  Seita.7G054500.1.p  30 MIKIC-ISFPAAFCNAIGLREACTVTLKTSLSSTSSWQVRV-LPYKDTSHQVGSGWKSFCEENMIKEGDVCTFNVIE 104
                         44445.99************99987777777889*******.3444445999*********************9664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.00322113IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-1625114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-1727114IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-1432104IPR003340B3 DNA binding domain
PROSITE profilePS5086310.835115IPR003340B3 DNA binding domain
CDDcd100173.53E-865100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MASLKNASSC AQGVYVIGPP AWLKEISTRM IKICISFPAA FCNAIGLREA CTVTLKTSLS  60
STSSWQVRVL PYKDTSHQVG SGWKSFCEEN MIKEGDVCTF NVIEMMLWHV VIDRC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G054500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684232.15e-78putative B3 domain-containing protein Os04g0347400
TrEMBLA0A368RS662e-80A0A368RS66_SETIT; Uncharacterized protein
TrEMBLK3YE695e-78K3YE69_SETIT; Uncharacterized protein
STRINGSi012530m9e-79(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31650.11e-06B3 family protein