PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G054800.1.p
Common NameSETIT_012375mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 123aa    MW: 13623 Da    PI: 9.1203
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G054800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.4e-1728111186
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         ++k++++  + k + +++p  f++++g+ +++++tl+   +s  sW+v++    k+ ++  ++GWk+F+++n +kegD ++F +++
  Seita.7G054800.1.p  28 WLKKEISTRMIKIC-ISFPAAFCNAIGLREACTVTLKTSLSSTSSWQVRV-LPYKDTSHQVGSGWKSFCEENMIKEGDLCTFNVIE 111
                         67888888888888.9*************99987777777889*******.3444445999*********************9664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.003329122IPR003340B3 DNA binding domain
PfamPF023623.0E-1429111IPR003340B3 DNA binding domain
SuperFamilySSF1019361.88E-1529121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.64442122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-1642121IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-772107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MKQKGSMASL KNASSRAQGV YVIGPPAWLK KEISTRMIKI CISFPAAFCN AIGLREACTV  60
TLKTSLSSTS SWQVRVLPYK DTSHQVGSGW KSFCEENMIK EGDLCTFNVI EMMLWHVIID  120
RC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G054800.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684232.12e-69putative B3 domain-containing protein Os04g0347400
TrEMBLA0A368RSH35e-86A0A368RSH3_SETIT; Uncharacterized protein
STRINGSi012375m5e-73(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31650.13e-06B3 family protein