PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G063300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 675aa    MW: 74387.3 Da    PI: 6.7587
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G063300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-1762114557
                         SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          +ft+eq++eLe  F+++  p+ e+ ++LA+k+gL+ r Vk WFqNrR ++kk
  Seita.7G063300.1.p  62 KCFTAEQIQELEFWFQECALPDDEMNQDLATKVGLEARHVKAWFQNRRSQMKK 114
                         68*************************************************97 PP
2START21.74e-08360402163205
                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                         +v w+ h+++++  ++ l+r+l +sg+a ga +w+  lqrqce
  Seita.7G063300.1.p 360 QVLWIVHAEYDDTAVPPLFRQLFQSGQALGAIRWLTSLQRQCE 402
                         799***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1747115IPR009057Homeodomain-like
PROSITE profilePS5007115.79155115IPR001356Homeobox domain
SMARTSM003893.8E-1258119IPR001356Homeobox domain
SuperFamilySSF466894.28E-1559115IPR009057Homeodomain-like
CDDcd000863.80E-1360115No hitNo description
PfamPF000464.0E-1562114IPR001356Homeobox domain
PROSITE profilePS5084811.078360406IPR002913START domain
SuperFamilySSF559615.86E-5475606No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MENEGQMNNN GQGIGLNSGN ETAPLHRINQ HEYDINAPKG AEDHLNTDRD EDDEEQSSEH  60
QKCFTAEQIQ ELEFWFQECA LPDDEMNQDL ATKVGLEARH VKAWFQNRRS QMKKKAVGGE  120
NKYIQQQNDK LLAENKKLKQ QLQPQSCGRC GDPTNEKWRL LIENARLNHT YLCAQENLIK  180
LVHNANLSPS ETMEHLASAS LNLVPFAYNG RTDQAFLMLA VKGEPMWLPT MNGEILNEQE  240
YKRHMFPGLL GPCPQGFVME ATKEANIVRA RASGISHWTL MFPGIIEGVR ASKVLSSGTS  300
TSRDGLIQEV RVKSLRITRQ IKNMWAVVDL SIDGMRGILP GGKRIGYTSC RHQISHALFQ  360
VLWIVHAEYD DTAVPPLFRQ LFQSGQALGA IRWLTSLQRQ CEYMAILRSS QVPSSVVSGV  420
AMSMLGRRSI LALAQRMMAS FYTAVSEPIT LKPGNIVKEW RGSCGTATEL SEATVRMVLS  480
ATMTVWLPGT PPQRVHEYLC NEQRRGEWDT FANTGAVQEL TSVITHPYLR GNNVVSVLEA  540
RDVPDQTNSN MLIMQEATSD VSCSLLVYSS IERNLIHAVM NGGDNTSIYL LPSGFAILPD  600
GHGKTHRAAA ASSSSAPTGH NGTAGSLLTA AYQALLPNNP SNHEAGTFNN AGNRVCNAIN  660
QILAAIGADI AVPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G063300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684238.10.0homeobox-leucine zipper protein ROC6-like
TrEMBLA0A368RST40.0A0A368RST4_SETIT; Uncharacterized protein
STRINGPavir.Ga02365.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-86protodermal factor 2