PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G073500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 180aa    MW: 19095.8 Da    PI: 8.2156
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G073500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.5e-1267147590
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90 
                         + +s+v+   ++v+p++ a       + + t+t    +grsWe+++  +++++   l++GW++F+ +ngL+ gD +v++l+ g+ e+
  Seita.7G073500.1.p  67 MCKSHVHPPFQVVVPRSLAPFLPDA-TVPATVT---WRGRSWEMRF--TGGRQIQRLEAGWRGFALDNGLRLGDGCVLELVdGNPEG 147
                         5667777777777777777444322.2333344...689*******..9999999************************98344333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.02E-1560146IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-1460156IPR015300DNA-binding pseudobarrel domain
CDDcd100179.42E-1361149No hitNo description
PROSITE profilePS5086310.99763158IPR003340B3 DNA binding domain
PfamPF023629.6E-1065146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MASNSSTPTP CSQGPRGIAV ADKNAESDAG TPKRADPQSA SETACVDGAI QPRIVPLLGK  60
PYFTCIMCKS HVHPPFQVVV PRSLAPFLPD ATVPATVTWR GRSWEMRFTG GRQIQRLEAG  120
WRGFALDNGL RLGDGCVLEL VDGNPEGVVF RAQVLRADIP AAIRERAGGY TSSAPILID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G073500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975400.11e-129B3 domain-containing protein Os04g0386900
SwissprotQ7XLP43e-66Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A368RT901e-128A0A368RT90_SETIT; Uncharacterized protein
STRINGSi012575m6e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]