PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.7G079900.4.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Trihelix

Protein Properties

Length: 250aa MW: 26671.1 Da PI: 8.6336

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G079900.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.8	4.6e-26	20	111	1	83
trihelix 1 rWtkqevlaLiearremeerlr.rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rWt+qe+l+Lie++r +e++ r rg+ ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki+e+e+++ + + + + Seita.7G079900.4.p 20 RWTRQEILVLIEGKRVVERSGRgRGRgrarggggegAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKIREWERGGFAAR--KEA 108 8**************9999853334566777778******************************************983322..234 PP trihelix 81 yfd 83 f Seita.7G079900.4.p 109 SFW 111 444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.493	20	88	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	8.3E-6	20	87	IPR009057	Homeodomain-like
Pfam	PF13837	1.2E-11	20	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MSSAGEARGV GTGRGSRLPR WTRQEILVLI EGKRVVERSG RGRGRGRARG GGGEGAEPTK 60 WAAVAEYCRR HGVDRGPVQC RKRWSNLAGD YKKIREWERG GFAARKEASF WAMRNDARRE 120 RRLPGFFDRE VYDILEGRAP GNAAAAAVAR PVAVDVESKE DVAAALDGGA RGAEGAGLFS 180 SSEDEDDQED DAATPSPTPM ATPALAPAPV ALPISVSELS EIGLPAISFA LLCCLVNPLL 240 LLLRSYSNV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	49	RGRGRGRARG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G079900.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU949356	1e-136	EU949356.1 Zea mays clone 402974 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975457.1	1e-151	trihelix transcription factor ASR3 isoform X1
Refseq	XP_004975458.1	1e-151	trihelix transcription factor ASR3 isoform X2
Swissprot	Q8VZ20	6e-51	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A368RT71	1e-175	A0A368RT71_SETIT; Uncharacterized protein
STRING	Si010590m	1e-151	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-41	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Seita.7G079900.4.p

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]