PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.7G102500.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 141aa MW: 16583.9 Da PI: 8.3832

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G102500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.7	4.6e-19	29	116	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 f+ +Y+ + GF+ rk++++k+k +g+it+ ++vC +e +r e+k++ + ++ +raetrt+C+ ++ v +++ +g+++v +l+leHnH+l Seita.7G102500.1.p 29 FWISYGGQKGFEDRKRYTNKRKLDGKITSCRYVCGNERHRLEDKRD-HFTKCPRAETRTDCQFCMGVIMDReKGNYKVVDLVLEHNHTL 116 999*************************************9999.999********9998888777*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-14	29	116	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MEEHREGLLP NLKPQVGTEF STIDEAWMFW ISYGGQKGFE DRKRYTNKRK LDGKITSCRY 60 VCGNERHRLE DKRDHFTKCP RAETRTDCQF CMGVIMDREK GNYKVVDLVL EHNHTLHLPQ 120 TSHGCQAWFW RVAFSFVVQV *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G102500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025876513.1	1e-65	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A368RUC3	1e-102	A0A368RUC3_SETIT; Uncharacterized protein
STRING	OS10T0571900-00	1e-65	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-12	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Seita.7G102500.1.p