PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.7G174000.1.p

Common Name

LOC101776549, SETIT_011076mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

TCP

Protein Properties

Length: 202aa MW: 20819.6 Da PI: 10.5997

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G174000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.2	6.3e-34	50	141	9	89
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec.eaesssssasnsssg......... 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c +a s s +a+++ g Seita.7G174000.1.p 50 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCsSAPSTSPAAAHPLLGkrpredhep 140 89*******************************************************9999944554333333333333333333333333 PP TCP 89 k 89 + Seita.7G174000.1.p 141 A 141 1 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-29	49	125	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	49	103	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MASRDAATFQ VYRPMPAPSP APAPMSLAAA APASDVAAPA PKKASPGAGK DRHSKVNGRG 60 RRVRMPIVCA ARVFQLTREL GLKSDGQTIE WLLRQAEPSI LAATGSGTTP AVFSCSSAPS 120 TSPAAAHPLL GKRPREDHEP APAPAPFWAT LQARPVAWGL SPAQEAAAQA YASVAAAQQG 180 HHLNLLSVLS GATRPSEEES R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G174000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727696	1e-114	KJ727696.1 Zea mays clone pUT5635 TCP transcription factor (TCP14) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976294.1	1e-140	transcription factor PCF1
Swissprot	Q9FMX2	5e-38	TCP7_ARATH; Transcription factor TCP7
TrEMBL	K3YA34	1e-139	K3YA34_SETIT; Uncharacterized protein
STRING	Si011076m	1e-139	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-34	TCP family protein

Link Out ? help Back to Top
Phytozome	Seita.7G174000.1.p
Entrez Gene	101776549