PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G184600.1.p
Common NameSETIT_010550mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 259aa    MW: 28866.2 Da    PI: 5.5584
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G184600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1958111456
                         -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ft+eq++ Le++F+  + ++  +e+ eLA++lgL+ rqV +WFqN+Ra+++
  Seita.7G184600.1.p  58 KRRFTEEQIRSLESMFHAhQAKLEPREKVELARELGLQPRQVAIWFQNKRARWR 111
                         458**************989*********************************9 PP
2HD-ZIP_I/II122.32.4e-3956149193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         e+krr+++eq+++LE++F++++ kLep++KvelareLglqprqva+WFqn+RAR+++kqlE+dy+aL++++dal+++ e L++e+ +L+++
  Seita.7G184600.1.p  56 ERKRRFTEEQIRSLESMFHAHQaKLEPREKVELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRAKFDALHARVEFLKQEKLALTTQ 146
                         69*******************99******************************************************************99 PP

         HD-ZIP_I/II  91 lke 93 
                         l+e
  Seita.7G184600.1.p 147 LHE 149
                         986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-1846115IPR009057Homeodomain-like
PROSITE profilePS5007117.50852113IPR001356Homeobox domain
SMARTSM003892.2E-1955117IPR001356Homeobox domain
CDDcd000867.79E-1857114No hitNo description
Gene3DG3DSA:1.10.10.603.5E-1958120IPR009057Homeodomain-like
PfamPF000461.1E-1658111IPR001356Homeobox domain
PRINTSPR000311.6E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000311.6E-693109IPR000047Helix-turn-helix motif
PfamPF021834.7E-13113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDRPDHHQHQ FYMPLPVQQQ QQQLCAPMMD EQASFLAARG GGGRGGSGGT VAGKGERKRR  60
FTEEQIRSLE SMFHAHQAKL EPREKVELAR ELGLQPRQVA IWFQNKRARW RSKQLEHDYA  120
ALRAKFDALH ARVEFLKQEK LALTTQLHEL SERLREREDR AGSGVAATAS SSSCNGGGVV  180
GEEAEDDKRN VVLGCVDMEP PESCVLGGAC ATPADVSVES ECDDHHHHLD YDDGFPESFC  240
ATPELWEPWP LVEWNAVA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G184600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282500.0KJ728250.1 Zea mays clone pUT6527 HB transcription factor (HB66) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976404.10.0homeobox-leucine zipper protein HOX22
SwissprotQ01IK01e-98HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ51e-98HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A368RX290.0A0A368RX29_SETIT; Uncharacterized protein
STRINGSi010550m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.26e-33homeobox 7