PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.7G199700.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 345aa MW: 39280 Da PI: 8.8437

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G199700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.3	2.4e-26	203	252	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l ++++yF+lpi++A+k+L++++++LKr+CR+yGI+RWPhRkiksl Seita.7G199700.1.p 203 DSITLVEIAQYFHLPIREASKTLKIGVSILKRKCRKYGIPRWPHRKIKSL 252 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.577	187	272	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-21	204	252	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MDMDAAVSTL TALSIFASTV EHAAFRSVHG YRVIGRKDGK WVRWERWVER QFVLSLSVPP 60 CREVAVPAAS PRILMAGWRG RPVFREGQTV GTWRCIVAFD SVAAVKPSSP PPPVLSPLVN 120 PQLECLPNLY KDLQKVFQFQ KVEKVPRRVL RDAKEQPIHS GEQEKTSDEA DSSGSDSDGD 180 TQSDKELAPS VQKQPRANRK HIDSITLVEI AQYFHLPIRE ASKTLKIGVS ILKRKCRKYG 240 IPRWPHRKIK SLDSLIQDLE YVLEDDPEED GQQELLQMEE EKQAAAIKAL TKRKKMLESE 300 KETLQQKPAL DLMTETKQFR DDVFKRRYRA KSAAIDMEME METE*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MDMDAAVSTL TALSIFASTV EHAAFRSVHG YRVIGRKDGK WVRWERWVER QFVLSLSVPP  60
CREVAVPAAS PRILMAGWRG RPVFREGQTV GTWRCIVAFD SVAAVKPSSP PPPVLSPLVN  120
PQLECLPNLY KDLQKVFQFQ KVEKVPRRVL RDAKEQPIHS GEQEKTSDEA DSSGSDSDGD  180
TQSDKELAPS VQKQPRANRK HIDSITLVEI AQYFHLPIRE ASKTLKIGVS ILKRKCRKYG  240
IPRWPHRKIK SLDSLIQDLE YVLEDDPEED GQQELLQMEE EKQAAAIKAL TKRKKMLESE  300
KETLQQKPAL DLMTETKQFR DDVFKRRYRA KSAAIDMEME METE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G199700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976506.1	0.0	protein RKD5
TrEMBL	A0A368RXP8	0.0	A0A368RXP8_SETIT; Uncharacterized protein
STRING	Si010837m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	8e-40	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Seita.7G199700.1.p