PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G201600.1.p
Common NameSETIT_011884mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family G2-like
Protein Properties Length: 304aa    MW: 32420.8 Da    PI: 9.7631
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G201600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.87.8e-312073255
             G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        pr+rWt +LH++Fv+a+e LGG++kAtPk il++m+ kgLt++hvkSHLQ+YR 
  Seita.7G201600.1.p 20 PRMRWTADLHRSFVRAIECLGGQDKATPKLILQFMGAKGLTISHVKSHLQMYRA 73
                        9****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.4711676IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-291674IPR009057Homeodomain-like
SuperFamilySSF466891.18E-151773IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-232073IPR006447Myb domain, plants
PfamPF002491.2E-72172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGGGGGRNGA VRQYIRSKEP RMRWTADLHR SFVRAIECLG GQDKATPKLI LQFMGAKGLT  60
ISHVKSHLQM YRAARLGAGR RGMQAAQLQR RHSCAGDEQG PKEFLCPPLK RARMGTAVAY  120
ESMQGSHRIS EARTAAAAAA AGSLYCIDDY MQAMATRRRI KEEGLRWQRR DAAAAASSLQ  180
AVGCLVQESD PFKQISRPEA NHLVLVPNQK QGSVEDGNGN GCSLFGSFST AAKDKPPEQC  240
SLSLSLGLDP NCTRAMAASS PSESSCILTA SPARRSSSDC SGHSDRFAGP GLSLELSLST  300
CGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-172175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-172175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-172175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-172175357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G201600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976515.10.0protein PHR1-LIKE 3 isoform X1
TrEMBLA0A368RXZ80.0A0A368RXZ8_SETIT; Uncharacterized protein
STRINGSi011884m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-26G2-like family protein