PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G232100.1.p
Common NameSETIT_010228mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 206aa    MW: 21234.2 Da    PI: 8.7479
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G232100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-192171155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        ++++GVr ++ +gr++AeIrdp     r +r++lg+f+tae Aa+a++aa++ ++g
  Seita.7G232100.1.p 21 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDAAALHFRG 71
                        689*******.**********8...2.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-132171IPR001471AP2/ERF domain
CDDcd000181.25E-192181No hitNo description
PROSITE profilePS5103224.542279IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-222280IPR016177DNA-binding domain
SMARTSM003806.1E-362285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-312279IPR001471AP2/ERF domain
PRINTSPR003671.4E-102334IPR001471AP2/ERF domain
PRINTSPR003671.4E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAPKNSALPP VSAATDGMVE PRFRGVRKRP WGRYAAEIRD PARKARVWLG TFDTAEAAAR  60
AYDAAALHFR GPKAKTNFPV AFAHPAPPPK MLAVSPSSST VESSSRDSPA ASPAAALPAP  120
SLDLSLGMPP MVAAQPFLFL DPRLAVTVAV PAPVPCRPAV VAGANKATCR EDEQSDTGSS  180
SSVVDASPAV DVGFDLNMPP PAEVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-201782975Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G232100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976762.11e-141ethylene-responsive transcription factor 4
TrEMBLA0A368RYU01e-140A0A368RYU0_SETIT; Uncharacterized protein
STRINGSi010228m1e-137(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-21ethylene responsive element binding factor 3