PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G237000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 950aa    MW: 107846 Da    PI: 7.7783
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G237000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1691.2e-21193276190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         ++Y +YA ++GFsvrk    k+ +n    +r + Cs+eg r +++ k     r+r+etr+gC a++ +k++ +gk++vt+++ +HnH+la
  Seita.7G237000.1.p 193 EYYVNYAGNMGFSVRKGCLDKTAKNS-NRSRVYFCSREGLRLKNDAK-----RPRPETRVGCPARIAIKLTPSGKYRVTEFVDDHNHQLA 276
                         69*******************96666.8999***********99877.....************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-19193276IPR004330FAR1 DNA binding domain
PfamPF105511.7E-22372465IPR018289MULE transposase domain
PROSITE profilePS5096610.151639686IPR007527Zinc finger, SWIM-type
PfamPF044343.4E-4656683IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-4661688IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 950 aa     Download sequence    Send to blast
MATPSTSGDP AAAGEPAPTP SMEPTRRRHP TSRISHIVRT YLDLSSSKKR RAAPKSHPKA  60
SGQEAHASED ETDGSKAGPP SSHPSRLLRE LGIRVSRYTH EERRDIILRY MQKRSGRQVV  120
NRAASKVPSR QALAERRRRG AGGKFLGKED TQIADNPEGK AEEEPELPPE VVSNAGGVPI  180
VGMVFESEEK AYEYYVNYAG NMGFSVRKGC LDKTAKNSNR SRVYFCSREG LRLKNDAKRP  240
RPETRVGCPA RIAIKLTPSG KYRVTEFVDD HNHQLAAPFD IEMLKSQRVL AKVQPGSQAS  300
NIPPGYKNYL RSKSTKYMKS EDLRALMDYF RRMKSDNPSF YYAIQVDENN KATNFFWADA  360
RSIMDYHYFC DVVCFDMIYK EFDCSRPLAL FLGMNHHRQM VIFGAAFLYD ETVESFKWLL  420
ETFKIAMCGK HPKTILTDRS VPLKEALGVT WPGTIHRFCV WQIYQSTVKS IAHMLITSEE  480
FTNDFRHCIF DIEDEQEFVG TWNMIMEKYN LRENEWLIKL FEDRENWAMP YNQQIFSGEI  540
RSMLQAENVG TRLKEYLDID TDLSPFLKIF ESSAEKRRQE EMQADYQANQ GVPRIPLPLL  600
WQAANLYTPI TFDLFRKECE LSMDCMAYGC GEFGSLSEYM ITVKNKTKDQ LVRFDSSNGT  660
VACTCKKFEN TGLLCCHILK VYELRNVKEI SSQYFLKRWR KDAKLVTMDE ADGFNFDIDT  720
KSSIPGRYAA LCRLFYKIAA KAAENVETFA LMASQSDQLL AEVEGTLQST LSDKSSGHSF  780
TDQLTHMAQN DYLLNSSHEA LGSTGKKKCE VARRRNDLET NKRKKARKGQ PDETEGGPSG  840
ELNITSGNIQ TEPRNTSNQF IPDQLMQGHY VLGHNFGLGI SQNLHNNLNQ FDQAASVSTL  900
QQQPFPGNGQ LTQGYPSDMH GLQFVETTPQ IDHQNGDEGQ SSIPVWDFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237241KRPRP
2805824KKKCEVARRRNDLETNKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G237000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976809.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A368RZ100.0A0A368RZ10_SETIT; Uncharacterized protein
STRINGPavir.Gb00517.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-104FAR1-related sequence 5