PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G262800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 245aa    MW: 26359.4 Da    PI: 10.1194
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G262800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71e-1662111255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr +k +g+WvAeIr+p +   r+r++lg++ t+  Aa+a++ a  +l+g
  Seita.7G262800.1.p  62 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 111
                         69*****99.**********732...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-3061120IPR001471AP2/ERF domain
PROSITE profilePS5103222.58962119IPR001471AP2/ERF domain
CDDcd000181.04E-2562120No hitNo description
PfamPF008472.7E-1062111IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2162121IPR016177DNA-binding domain
SMARTSM003807.9E-3662125IPR001471AP2/ERF domain
PRINTSPR003676.4E-126374IPR001471AP2/ERF domain
PRINTSPR003676.4E-12101121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MQGEYRSSSE ESAAAAAAAA AAAAMAPLAA AAAAAVKMEE QAAAMAAAQA PAPHQQMQPR  60
RQYRGVRMRK WGKWVAEIRE PHKRTRIWLG SYATPVAAAR AYDTAVFYLR GRSARLNFPD  120
EIPALAMAEG GGEPARGGGG GGGDPDGGTL SAASIRKKAI EVGSRVDALQ TGMMVAPPHH  180
RERQRHHHHH HGHHLPQLQL HADEEEHRQQ QEQKQQQQQR AAWSGRAKNP DLNRAPSPES  240
SDAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1461122466ATERF1
3gcc_A5e-1461122466ATERF1
5wx9_A8e-14621211474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G262800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669061e-169EU966906.1 Zea mays clone 298090 dehydration responsive element binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977035.11e-174ethylene-responsive transcription factor RAP2-10-like
TrEMBLA0A368RZW11e-172A0A368RZW1_SETIT; Uncharacterized protein
STRINGPavir.J27349.1.p1e-101(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.16e-39DREB and EAR motif protein 2