PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G267900.1.p
Common NameLOC101752777, SETIT_011269mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 141aa    MW: 15358.5 Da    PI: 10.4101
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G267900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.73.6e-192660135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ C+tt Tp+WR gp g+++LCnaCG++yrkk++
  Seita.7G267900.1.p 26 CVECRTTATPMWRGGPTGPRSLCNACGIRYRKKRR 60
                        ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.5E-142070IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.37E-132361No hitNo description
Gene3DG3DSA:3.30.50.108.5E-152561IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.1762656IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402651IPR000679Zinc finger, GATA-type
PfamPF003205.0E-172660IPR000679Zinc finger, GATA-type
CDDcd002023.54E-122661No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MMDSSEQKVI GIAPAPAVAE AGRPCCVECR TTATPMWRGG PTGPRSLCNA CGIRYRKKRR  60
QELGLDNNQK PQQNHQQPPP QQQPQQQQHQ DHSQAPNAVK DNKSSGLQVV KKRRVLMGVE  120
EAAILLMALS SSSRSTLLHG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G267900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977074.11e-99GATA transcription factor 23
TrEMBLK3YAM73e-98K3YAM7_SETIT; Uncharacterized protein
STRINGSi011269m4e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.18e-21GATA transcription factor 23