PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G289500.1.p
Common NameSETIT_010259mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 403aa    MW: 42782.1 Da    PI: 9.9591
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G289500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.28.1e-12117143127
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCG 27 
                         C  Cg+tkT++WR gp g++tLCn CG
  Seita.7G289500.1.p 117 CGDCGVTKTSQWRTGPMGPRTLCNTCG 143
                         99************************9 PP
2GATA60.81.8e-19237271135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg+++Tp+WR+gp+g+ tLCnaCGl+yr ++l
  Seita.7G289500.1.p 237 CVHCGSSETPQWREGPEGPATLCNACGLRYRQRRL 271
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.0E-5111164IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-9113152No hitNo description
CDDcd002021.04E-7116143No hitNo description
Gene3DG3DSA:3.30.50.107.1E-8116145IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.8E-9117143IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.302117143IPR000679Zinc finger, GATA-type
SMARTSM004018.8E-20231285IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-14231283No hitNo description
PROSITE profilePS5011412.822231267IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.2E-16235270IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.60E-16236284No hitNo description
PfamPF003202.3E-17237271IPR000679Zinc finger, GATA-type
PROSITE patternPS003440237262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MTPLSPSEQE RHRETASPVP NAPPPPPQGS GPSKTQRPAV ATAMMPGGGG TERAREGRLA  60
GAVSWMAALL LAAVVAGRDA AVPRKKRGPR VRAETSRWWS FRLPVPPPPA TPRAGTCGDC  120
GVTKTSQWRT GPMGPRTLCN TCGRRRWAAG EQWGEPRRRR RATTPTTVSD QPPPPPPDGP  180
VWEGPLPEGY RTARRNAAKG SSPSPAPATA TTDSDKPAPQ NKKKNKAAAA AASEKQCVHC  240
GSSETPQWRE GPEGPATLCN ACGLRYRQRR LLPEYRPQAS PTFDKENHAS MHSEVLELRQ  300
QSKNKQKQQQ PPALAQPQPM DDTQQDVDHL MPPPLPRCVA NDLRVGATDG DSANKASGSG  360
AAVASTDPVG EASSLDPFLL DGPAAPMVVD EPCWMIAGSS TP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143160RRRWAAGEQWGEPRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G289500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702967.10.0myosin-1
TrEMBLK3Y7R80.0K3Y7R8_SETIT; Uncharacterized protein
STRINGSi010259m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.27e-24GATA transcription factor 3