PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G289600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 598aa    MW: 65206.6 Da    PI: 11.1686
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G289600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.31.2e-14281312132
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                         C +Cg+ +Tp+WR+gp g+ tLCnaCG++ + 
  Seita.7G289600.1.p 281 CLQCGAVETPQWRSGPMGSGTLCNACGVRLKA 312
                         89**************************9986 PP
2GATA512e-16416450135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +Cg+++Tp+WR+gp g +tLCnaCG++yr  +l
  Seita.7G289600.1.p 416 CLHCGSSSTPQWREGPMGRSTLCNACGVRYRQGRL 450
                         99*****************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.24E-12275322No hitNo description
SMARTSM004011.0E-11275325IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.573275329IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-13279318IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.56E-9280323No hitNo description
PROSITE patternPS003440281306IPR000679Zinc finger, GATA-type
PfamPF003203.6E-12281312IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-13410468No hitNo description
PROSITE profilePS5011412.637410446IPR000679Zinc finger, GATA-type
SMARTSM004013.6E-15410464IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.8E-14414448IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.40E-12415471No hitNo description
PfamPF003203.2E-14416450IPR000679Zinc finger, GATA-type
PROSITE patternPS003440416441IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MVRCLCSSTR RVVKQGSTGS HGKTVRFGIR SYCSENTSQG HTQRSRFHLR QSSPEFVKRK  60
FCGFRDPRGH PRKENTAKKK KKGMTRHLSG TLFPPPAADA PARRSPLARS LTRRRRRLRL  120
PSQRVRPPTM ATVEGDKIEP PGLGPRTRRS AATRETGDMA GGAGEGEREG PLGYVLSLPA  180
ASLPLPVAVS CLDATVPRKA RSRLRLRVQP CAWWAFKLPV PAPEEAKSPA PPASMATNPT  240
EEARSPRPQR LRVRHGPPPS PDDPHTPSPA MERPAKRARR CLQCGAVETP QWRSGPMGSG  300
TLCNACGVRL KAAGALREQV HRPPPASART VAEPPPESPV SDSSPDGPIW EPGSVPDVYL  360
LRKKPPKQGK PPPPRMEPAS PPAPAPAVYL LKKKKKKPPK ASKKKPWRPR KSSKRCLHCG  420
SSSTPQWREG PMGRSTLCNA CGVRYRQGRL LPEYRPLASP SFEPSEHANR HSQVLQLHRQ  480
RKGQKNQPPL PTEQPRLMDD LTGALACSGD GDDPMNVLLP RRWHDKDEYP RTPLHQPLPQ  540
PADSLPGDPR VGGIDATAQG RGGRGNDPNG APSSLDSLLL EGPSAPLIDD GDESLIE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1390397LKKKKKKP
2391405KKKKKKPPKASKKKP
3392404KKKKKPPKASKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G289600.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977277.10.0ras-associated and pleckstrin homology domains-containing protein 1 isoform X1
TrEMBLA0A368S0V10.0A0A368S0V1_SETIT; Uncharacterized protein
STRINGSi010130m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.18e-26GATA transcription factor 4