PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G301900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 173aa    MW: 19112 Da    PI: 6.093
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G301900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.86.2e-201269659
                        -EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                WRKY  6 nWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
                        +WrKYG K+++g+ ++rsY+rCt++   gC ++k+v+++ ++d  ++++tY+++H+++
  Seita.7G301900.1.p 12 RWRKYGEKKINGTSYTRSYFRCTYKddtGCLATKHVQQKdSSDHPMFQVTYHNNHTCN 69
                        8***********************99999*******875167999***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.26266IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-20869IPR003657WRKY domain
SuperFamilySSF1182904.71E-181069IPR003657WRKY domain
SMARTSM007745.4E-251270IPR003657WRKY domain
PfamPF031065.0E-211268IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVAREIDLEE KRWRKYGEKK INGTSYTRSY FRCTYKDDTG CLATKHVQQK DSSDHPMFQV  60
TYHNNHTCNN CTKNNTTPAN NSSKGAAMNI KQEPPAVAVL PPTLVEAYSD LPSFDQDQTP  120
PCQQAEPSPF PIGMQQPWCG TATSSSTTSS CISGESCDEY SASAAETWRQ PN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G301900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805829.13e-43WRKY transcription factor 55-like
TrEMBLA0A368S1L51e-127A0A368S1L5_SETIT; Uncharacterized protein
STRINGSi026670m3e-38(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2782934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.13e-12WRKY DNA-binding protein 54