PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G306500.1.p
Common NameLOC101752780, SETIT_010417mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 367aa    MW: 40149.1 Da    PI: 8.4382
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G306500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.93.9e-53161491129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdee+++ yL +k  + +++  ++i evd++k+ePwdLp+k+k +ekew+fF+++d ky+tg r+nratk+gyWkatgkd+e
  Seita.7G306500.1.p  16 LPPGFRFHPTDEEVITSYLLEKFLNPSFDP-QAIGEVDLNKCEPWDLPSKAKMGEKEWFFFCHKDMKYPTGMRTNRATKEGYWKATGKDRE 105
                         79*************************999.88***************99999************************************** PP

                 NAM  92 vlsk......kgelvglkktLvfykgrapkgektdWvmheyrle 129
                         +++       ++elvg+kktLvfy grap+g+kt+Wvmhe+rle
  Seita.7G306500.1.p 106 IFKPaaaagaGRELVGMKKTLVFYMGRAPRGSKTNWVMHEFRLE 149
                         ***98888888888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-6012175IPR003441NAC domain
PROSITE profilePS5100556.07416175IPR003441NAC domain
PfamPF023658.5E-2717148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MVERSVKSEH GGGLFLPPGF RFHPTDEEVI TSYLLEKFLN PSFDPQAIGE VDLNKCEPWD  60
LPSKAKMGEK EWFFFCHKDM KYPTGMRTNR ATKEGYWKAT GKDREIFKPA AAAGAGRELV  120
GMKKTLVFYM GRAPRGSKTN WVMHEFRLEG KSRHNNAKLR FNPKDEWVVC KVHHKNGEAK  180
KPAEEYSAST PNVSSVISDD AGEGDDFLDS MINPMYFNNA GSLPTSTTTV NAAPPQNADY  240
AISSTAAGAT TGTTSSFVNL PNYGFNDTTS INNLHQVALA NSAAPRSSFS SSWNMLHADH  300
NQAMGSYNLH HQAMVAKALG GVISPNFAGG LPESSVTGIL QQNSVGMPQQ KLPGNYGEFY  360
ANHLKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-531418115171NO APICAL MERISTEM PROTEIN
1ut4_B6e-531418115171NO APICAL MERISTEM PROTEIN
1ut7_A6e-531418115171NO APICAL MERISTEM PROTEIN
1ut7_B6e-531418115171NO APICAL MERISTEM PROTEIN
3swm_A5e-531418118174NAC domain-containing protein 19
3swm_B5e-531418118174NAC domain-containing protein 19
3swm_C5e-531418118174NAC domain-containing protein 19
3swm_D5e-531418118174NAC domain-containing protein 19
3swp_A5e-531418118174NAC domain-containing protein 19
3swp_B5e-531418118174NAC domain-containing protein 19
3swp_C5e-531418118174NAC domain-containing protein 19
3swp_D5e-531418118174NAC domain-containing protein 19
4dul_A6e-531418115171NAC domain-containing protein 19
4dul_B6e-531418115171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G306500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977422.10.0NAC domain-containing protein 77
SwissprotQ5CD171e-118NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLK3Y8760.0K3Y876_SETIT; Uncharacterized protein
STRINGSi010417m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.27e-75Arabidopsis NAC domain containing protein 87