PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G308300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 555aa    MW: 61207.9 Da    PI: 6.6109
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G308300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.3e-16222282155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse...ng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +    ++  k ++++lg ++t+e Aa+a++ a++k++g
  Seita.7G308300.1.p 222 SVYRGVTRHRWTGRFEAHLWDkHCLtsiQNkkKGRQVYLGAYDTEEAAARAYDLAALKYWG 282
                         78*******************9988888445455*************************98 PP
2AP256.47.1e-18322374156
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg+f+t eeAaka++ a+ +++g+
  Seita.7G308300.1.p 322 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 374
                         89****99**********99966...3.6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-17222291IPR016177DNA-binding domain
PfamPF008475.2E-14222282IPR001471AP2/ERF domain
CDDcd000187.83E-12222291No hitNo description
Gene3DG3DSA:3.30.730.102.8E-17223291IPR001471AP2/ERF domain
SMARTSM003802.5E-28223296IPR001471AP2/ERF domain
PROSITE profilePS5103220.89223290IPR001471AP2/ERF domain
PRINTSPR003675.4E-6224235IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-18322383IPR016177DNA-binding domain
CDDcd000181.10E-25322383No hitNo description
PfamPF008472.3E-13322373IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-18323381IPR001471AP2/ERF domain
PROSITE profilePS5103219.032323381IPR001471AP2/ERF domain
SMARTSM003803.2E-26323387IPR001471AP2/ERF domain
PRINTSPR003675.4E-6363383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MIVAWLLQGN AMQKQGSCSA LLRQVSPNAS SRRGLQETRR RGREEKPTAC NACNAGLRGA  60
GCHLDDKQTG CHVVLAATEI LTKTPPLPLV LYKNPCSVHL AGKSFTCTGN ATTIILHQGA  120
SDEGASRRTT RKRRRSEKRH THMERSPRPS PPPVSSPPSS SSSSSISTEE IPIPPRKRRA  180
RPTQAEGGAP DKSKRPRKEA VRHRHSKEDP NATAASAGKR SSVYRGVTRH RWTGRFEAHL  240
WDKHCLTSIQ NKKKGRQVYL GAYDTEEAAA RAYDLAALKY WGPETVLNFP AEDYSNEMEG  300
VSREEYLASL RRRSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTFDTQEEA  360
AKAYDLAAIE YRGANAVTNF DISCYLDHPL LLAQLQQDPQ VVPALNQEPQ PDQSETTVQE  420
SDSSEEKTPD NNAEPDDNAE PDANAEPANN AEPLTVDDSI EESLWSPCMD YELDTMSRSN  480
FGSSINLNEW FTDADFDSNI GCLFDGCSLV DEGSKDGVGL ADFSLFEEGD GKLKDVISDM  540
EEGIHPPTMI SVCN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130134RKRRR
2130135RKRRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G308300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381840.0BT038184.1 Zea mays full-length cDNA clone ZM_BFb0216H15 mRNA, complete cds.
GenBankKJ7269100.0KJ726910.1 Zea mays clone pUT3455 AP2-EREBP transcription factor (EREB85) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977441.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A368S1F60.0A0A368S1F6_SETIT; Uncharacterized protein
STRINGSi012026m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-75AP2 family protein