PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.7G331700.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

LBD

Protein Properties

Length: 208aa MW: 22265.4 Da PI: 7.7214

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G331700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.1	8.8e-45	17	116	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +Ca+Ck+lrr+C+++Cv+apyfp e+p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++ql+ Seita.7G331700.1.p 17 PCASCKLLRRRCTQECVFAPYFPPEDPHKFAIVHKVFGASNVSKMLQELPAQQRADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQLQ 107 7**************************************************************************************** PP DUF260 92 aelallkee 100 +lal+k+e Seita.7G331700.1.p 108 MQLALAKAE 116 ***9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.653	16	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.1E-44	17	114	IPR004883	Lateral organ boundaries, LOB
Gene3D	G3DSA:3.40.50.1820	5.7E-4	22	145	IPR029058	Alpha/Beta hydrolase fold

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MAGSGSSSGS GSSSSPPCAS CKLLRRRCTQ ECVFAPYFPP EDPHKFAIVH KVFGASNVSK 60 MLQELPAQQR ADAVSSLVYE ANARMRDPVY GCVGAISYLQ QQVSQLQMQL ALAKAEILCV 120 QMQHDGHATV SSPPSAASQQ LERKQQQLME CEAYGSLLMQ NGLMNTSFNS TAAAHQQQQM 180 LAGSLGSAGN TAMMLQEACL KKESLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-49	6	118	4	112	LOB family transfactor Ramosa2.1
5ly0_B	6e-49	6	118	4	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G331700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661028.1	1e-151	LOB domain-containing protein 12
Swissprot	Q8LBW3	2e-68	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A368S2P5	1e-150	A0A368S2P5_SETIT; Uncharacterized protein
STRING	Si011647m	1e-134	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-59	LBD family protein

Link Out ? help Back to Top
Phytozome	Seita.7G331700.1.p

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]