PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.7G334400.1.p

Common Name

SETIT_012474mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

WOX

Protein Properties

Length: 221aa MW: 24011 Da PI: 8.5868

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G334400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.7	6.1e-21	6	66	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a+e+++++++l +++ ++V++WFqN++a+e++ Seita.7G334400.1.p 6 STRWCPTPEQLMILEEMYRSgVRTPNAAEIQQITAHLayygRIEGKNVFYWFQNHKARERQ 66 58***************99************************************97 PP
2	Wus_type_Homeobox	121.4	3.6e-39	5	67	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLee+y+sG+rtPn++eiq+ita+L+ yG+ie+kNVfyWFQN+kaRerq+ Seita.7G334400.1.p 5 PSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQR 67 689***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.463	2	67	IPR001356	Homeobox domain
SMART	SM00389	6.8E-6	4	71	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.84E-12	4	70	IPR009057	Homeodomain-like
CDD	cd00086	5.89E-4	5	60	No hit	No description
Pfam	PF00046	1.3E-18	6	66	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.6E-8	8	66	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH 60 KARERQRLRR RLCARHQQQT AAVAPPPGPG PAGGSSAAGV HPAVMQLHHH HHPYATCSFM 120 PHHLGGYLGQ QHQQQAATLP AVPAAAGAGG KAMLSNHQQP EEWETMEHCN AATASGGSSD 180 ELPPCCRRPL KTLDLFPTKS TGLKDECSSS KSSSCSTSTN *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in leaf formation. {ECO:0000269\|PubMed:15169755}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G334400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969087	1e-100	EU969087.1 Zea mays clone 325979 WUSCHEL-related homeobox 3B mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022684499.1	1e-164	WUSCHEL-related homeobox 3A
Swissprot	Q70UV1	4e-80	WOX3A_MAIZE; WUSCHEL-related homeobox 3A
TrEMBL	K3YE15	1e-162	K3YE15_SETIT; Uncharacterized protein
STRING	Si012474m	1e-163	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2177	38	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	7e-35	WOX family protein

Link Out ? help Back to Top
Phytozome	Seita.7G334400.1.p

Publications ? help Back to Top
Scanlon MJ NARROW SHEATH1 functions from two meristematic foci during founder-cell recruitment in maize leaf development. Development, 2000. 127(21): p. 4573-85 [PMID:11023861]