PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G005700.2.p
Common NameSETIT_026433mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 334aa    MW: 37292.7 Da    PI: 4.2303
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G005700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.18.8e-13358655
                 AP2  6 VrwdkkrgrWvAeIrd.pse...ng..krkrfslgkfgtaeeAakaaiaarkkleg 55
                        V +++++gr++A+++d  +    ++  k ++++lg ++t+e Aa+a++ a++k++g
  Seita.8G005700.2.p  3 VNRHRWTGRFEAHLWDkHCLtsiQNkkKGRQVYLGAYDTEEAAARAYDLAALKYWG 58
                        899*************9988888445455*************************98 PP
2AP257.53.5e-18101153156
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg+f+t eeAaka++ a+ +++g+
  Seita.8G005700.2.p 101 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 153
                         89****99**********99966...3.6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.413166IPR001471AP2/ERF domain
PfamPF008471.9E-10358IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-14367IPR016177DNA-binding domain
SMARTSM003801.4E-21372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-14567IPR001471AP2/ERF domain
CDDcd000181.92E-27101162No hitNo description
PfamPF008471.1E-13101152IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-18101162IPR016177DNA-binding domain
SMARTSM003803.2E-26102166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-19102160IPR001471AP2/ERF domain
PROSITE profilePS5103219.032102160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MRVNRHRWTG RFEAHLWDKH CLTSIQNKKK GRQVYLGAYD TEEAAARAYD LAALKYWGPE  60
TVLNFPAEDY SNEMSEMEGV SREEYLASLR RRSSGFSRGV SKYRGVARHH HNGRWEARIG  120
RVFGNKYLYL GTFDTQEEAA KAYDLAAIEY RGANAVTNFD ISCYLDHPPL LAQLQQDPQV  180
VPALNQEPQP DQSETTVQES DSSEEKTPDN NAEPGDNAEP DANAEPDNNA EPLTVDDSIE  240
ESLWSPCMDY ELDTMSRSNF GSSINLNEWF TDADFDSNIG CLFDGCSSVD EGSKDGVGLA  300
DFSLFEEGDG KLKDVISDIE EGIHPPTMIS VCN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G005700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381840.0BT038184.1 Zea mays full-length cDNA clone ZM_BFb0216H15 mRNA, complete cds.
GenBankKJ7269100.0KJ726910.1 Zea mays clone pUT3455 AP2-EREBP transcription factor (EREB85) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978469.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A368S2V70.0A0A368S2V7_SETIT; Uncharacterized protein
STRINGSi026433m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-72AP2 family protein