PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G024600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 510aa    MW: 55285.6 Da    PI: 4.3815
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G024600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.52.7e-19111383127
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkklelee..vikevdiykvePwdLp.k.kvka.eekewyfFskrdkkya....tgkrknratksgyWk 84 
                         +GfrF+Pt  e  ++yL + v+g++l+++   v++++d+y +eP dL  + +    ++ + +fF++ + +++    + +r++ra+ s  W+
  Seita.8G024600.1.p  11 RGFRFNPTPLEAATYYLPRLVAGTPLHEAVrpVVNHADVYGCEPADLArQfC-PLpRTGHRFFFTHCKLQQPqragKASRATRAAGSRSWH 100
                         7************************555322259999**********83332.222455789999888777733334557777777889** PP

                 NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         ++   k+v+++ g +vg  + L +     + ge tdW+m+ey+
  Seita.8G024600.1.p 101 SQSV-KDVVDHAGVKVGEIRKLRYK----KGGEYTDWLMDEYS 138
                         9977.66667699***********8....567899*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-227159IPR003441NAC domain
PROSITE profilePS5100522.7299159IPR003441NAC domain
PfamPF023652.1E-1011138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MAALGPTIFS RGFRFNPTPL EAATYYLPRL VAGTPLHEAV RPVVNHADVY GCEPADLARQ  60
FCPLPRTGHR FFFTHCKLQQ PQRAGKASRA TRAAGSRSWH SQSVKDVVDH AGVKVGEIRK  120
LRYKKGGEYT DWLMDEYSCC LEDAVAGDRQ FVLCNIYVSP RADQGSAARQ ESAAFFAPPA  180
PAPVVIAQTA APKRPAPQSA EPPCPKRMRG AVAPTPPVVQ PAGYCTASFA PPLPYVPHIT  240
TSAQPPPPPV PTRLAAPPLS RSLAPTPLHP RSPPQQQMPP PPTLPVVRAC HMPVQAPARH  300
CQPPQPSVQK KQSTRDPFEA AELGDEAEEE RVAAPDPKES PAALVDQDDD WAELEKCMDD  360
AVPTAEGSTV SEDEMDQTKQ GTDDPFEAAE LRDEAEKESV AAPGPAQDFD MDEFCRSLEG  420
NGDLVRLFED EDNVLTAEAE EEAAANSEGS TMAEDAPDPS SMEESPAAAQ DFDIDEFCKS  480
VQDDIWACEL DHFACSFENE SFSWEYGMG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G024600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980150.10.0atherin
TrEMBLA0A368S3H10.0A0A368S3H1_SETIT; Uncharacterized protein
STRINGSi028319m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.16e-10NAC domain containing protein 103