PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G025500.1.p
Common NameSETIT_028024mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 304aa    MW: 33045.6 Da    PI: 4.6177
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G025500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.94.7e-11101192125
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                         ppG+rF Pt  el+ +yL++ v++        e e ++  +d+y+++P +L +   ++ +++ +wyf + +              + g+W+
  Seita.8G025500.1.p  10 PPGYRFAPTPLELILCYLNPWVTSPAgqtpcGEPEGIVCAADVYSADPGTLTSglrHFGHDDGNWYFLCVA--------------RGGTWH 86 
                         9********************99877665642223467788**********85344555566799999975..............468899 PP

                 NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125
                          +gk  +v +      g ++t+ +     p g k+ W+m+e
  Seita.8G025500.1.p  87 GSGKRIAVGR-----HGYRQTFEYR---VPGGGKSAWLMEE 119
                         8888655544.....6899999884...8888899999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-193142IPR003441NAC domain
PROSITE profilePS5100514.3039142IPR003441NAC domain
PfamPF023654.4E-1210119IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEQAPWPSAP PGYRFAPTPL ELILCYLNPW VTSPAGQTPC GEPEGIVCAA DVYSADPGTL  60
TSGLRHFGHD DGNWYFLCVA RGGTWHGSGK RIAVGRHGYR QTFEYRVPGG GKSAWLMEEI  120
GSSMPDATGG EGVKVLCRVH RTPRAAADDD ANEERQETDE VVQLRSSKKR RCELRQEHDF  180
AAAGYWAAAA PTDVGCSYAS TSQTALVNAA APTTWQQQPM MEQGVASYHC TGVNGGVYVK  240
DEQQPLEVLL PDEGWQQFVE IGYGFDYSTE DGLFKKNSTE DAQLNDELMH NTFSCPKPSD  300
GAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G025500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978357.10.0NAC domain-containing protein 26
TrEMBLK3ZN490.0K3ZN49_SETIT; Uncharacterized protein
STRINGSi028024m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.14e-11NAC domain containing protein 96