PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G062300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 462aa    MW: 48497.7 Da    PI: 8.1572
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G062300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17361393133
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                         Cs+C++ +Tp+WR gpdg+ tLCnaCG++y+ +
  Seita.8G062300.1.p 361 CSHCHSPDTPQWRAGPDGPGTLCNACGIRYAAN 393
                         ******************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.104.5E-14354395IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.596355393IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-16355409IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.52E-14357418No hitNo description
CDDcd002022.85E-14360416No hitNo description
PROSITE patternPS003440361386IPR000679Zinc finger, GATA-type
PfamPF003201.9E-15361394IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MRTQSHLSLL DVPDDLPDCD GGCFRPGGGL CCPDDPLDLV LQLFPAAAPA PHEVSLTALG  60
IGGSPRRQDQ PPPFGWAQEN GFGDVTVLGA GSAPGGGGVW ERDSCGLSGR VPEHMEPLDV  120
DKYLVDHAPD DGGGEVTVCN PSRDTRGMPA SGVRACGALG GVVSNYAPPL LAPMSAGALH  180
PYACRAFDGV VSNGAPPLPA PMPAGDGLHA CGAQRGAVSN DAPPMPAGAL HACRALVHVV  240
SDDAPPLRAH APPSARSLPA SRTSSGSLTP TTSETSSPAP VWRPLAWPVP KKQRRPPVKC  300
RKRPWSLDFP LHAVPVAPPD NPGDSNGNGD ARNSFDNAGG GGIRRRRPVP RQRNRQAQRV  360
CSHCHSPDTP QWRAGPDGPG TLCNACGIRY AANKLLPEYR PSTAPSFRSD QHSNRHRKVV  420
KLREQKAKET LKAMPDPVPV SPKSSWMHVD THQQACDIPS I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290303KKQRRPPVKCRKRP
2344351RRRPVPRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G062300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368S5260.0A0A368S526_SETIT; Uncharacterized protein
STRINGSi028169m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16076913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.17e-26GATA transcription factor 4