PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G080400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 622aa    MW: 66852.7 Da    PI: 4.9893
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G080400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM608e-19111383127
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkk.lelee.vikevdiykvePwdLpk....kvkaeekewyfFskrdkkya....tgkrknratksgyW 83 
                         +GfrF+Pt  e  ++yL + v+g + +e+ + v++++d+y +eP dL +        ++ + + F++ + +++    + +r++ra+ sg W
  Seita.8G080400.1.p  11 RGFRFNPTPLEAATYYLPRLVAGAPlHEVVRpVVNHADVYGCEPADLARqfcpL--PRTGHRFLFTHCKLQQPqragKVSRATRAAGSGSW 99 
                         7************************533333259999**********8423321..2334566676666555522224458889999**** PP

                 NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         +++   k+v+++ g +vg  + L +     + g  tdW+m+ey+
  Seita.8G080400.1.p 100 HSQSV-KDVVDHAGVKVGEIRKLRYK----KGGAYTDWLMDEYS 138
                         *9977.66667699***********8....456789*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-228159IPR003441NAC domain
PROSITE profilePS5100522.4059159IPR003441NAC domain
PfamPF023652.5E-1011138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MAAPGPVIFS RGFRFNPTPL EAATYYLPRL VAGAPLHEVV RPVVNHADVY GCEPADLARQ  60
FCPLPRTGHR FLFTHCKLQQ PQRAGKVSRA TRAAGSGSWH SQSVKDVVDH AGVKVGEIRK  120
LRYKKGGAYT DWLMDEYSCC LEDAVAGDRQ CVLCNIYVSP RADQGSAARQ ESAAFFAPPA  180
PAPIVIAQAA APKRPAAQSA EPPCPKRMRG AVAPTPPVVQ PAGYWTASFA PPLSYVPHIA  240
ASAQPPPPPV PTRLAAPPLS RSLEPAPPQP KQRMPPPPTL PVVRACHMPV EAPARHCQPP  300
QPSVQRKQST RDPFEAAELG DEAEEERVAA PDPKESPAAL VDQDDDWAEL EKCMDDAVPT  360
AEGSTVSEDE MDQTRQSTGD PFEAAELRDE AEKESVAAPG PAQDFDMDEF CRSLEGNGDL  420
VRLFENEDNV LTAQAEEEAA ANSEGSTMAE DAPDPSSMEE SPAAAQDFDI DEFCKSVQDD  480
IRACELDHFA CSFENESISW EYGMASRRWW LTAEELAHGP VGFPVDGEAE GGGGERGGQA  540
TASHCVPALL GRTSPAGLGR RNGSRRQRRN RHLNRIATSI FLPLVWATVF AADRSGGGPA  600
QGGGGRKVVP ARRPAVYHGE R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1564570RRQRRNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G080400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980141.10.0pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBLA0A368S5D20.0A0A368S5D2_SETIT; Uncharacterized protein
STRINGSi027582m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.14e-13NAC domain containing protein 57