PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G088600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 216aa    MW: 23993.3 Da    PI: 10.9905
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G088600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY40.17.1e-13761112359
                         EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY  23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          YY+Ct++gC ++kk+ers  d +++ei Y+g+ nh 
  Seita.8G088600.1.p  76 DYYKCTFPGCFARKKLERSL-DCQIMEIAYKGRDNHA 111
                         5*******************.**************96 PP
2WRKY90.61.2e-28156212258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                         dDg++WrKYGqK+ kg+++prsY++C++ gCp++k+ver+++d++ +++tYe++Hn 
  Seita.8G088600.1.p 156 DDGCRWRKYGQKVLKGNPNPRSYFKCAMFGCPARKHVERASHDQRSFVTTYESKHNT 212
                         8******************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.0E-471112IPR003657WRKY domain
SuperFamilySSF1182901.24E-776113IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-976113IPR003657WRKY domain
PfamPF031061.1E-577110IPR003657WRKY domain
PROSITE profilePS5081110.55677113IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-29146212IPR003657WRKY domain
SuperFamilySSF1182901.96E-25148212IPR003657WRKY domain
PROSITE profilePS5081130.205150215IPR003657WRKY domain
SMARTSM007743.1E-32155214IPR003657WRKY domain
PfamPF031061.0E-23156211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MASGGLGERV TGERVAGRGR WMTSWARTGV KGWRQRGGGG RCRSRGKRRP RCIFLFFLLL  60
KLFSSGPQHA AGDGPDYYKC TFPGCFARKK LERSLDCQIM EIAYKGRDNH ARPRNTSRGS  120
AGTAVQVLQS GGGNASERRF GEMPAMSTVS DTEVIDDGCR WRKYGQKVLK GNPNPRSYFK  180
CAMFGCPARK HVERASHDQR SFVTTYESKH NTTTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25146211873Probable WRKY transcription factor 4
2lex_A3e-25146211873Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G088600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703602.11e-108WRKY transcription factor WRKY24-like
SwissprotQ6B6R49e-42WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A368S5R91e-158A0A368S5R9_SETIT; Uncharacterized protein
STRINGXP_008463823.12e-42(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5970322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.25e-43WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]