PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G125400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 391aa    MW: 43306.2 Da    PI: 8.5757
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G125400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00057194216223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +C+ C+++++++ +L  H +  H
  Seita.8G125400.1.p 194 SCSVCSRVYPTSRLLSIHVSEaH 216
                         6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003558.7166191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168191IPR007087Zinc finger, C2H2
SMARTSM003555.4193216IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195216IPR007087Zinc finger, C2H2
SMARTSM003550.33231256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280233256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGGGGAADWR SASQGSGGGG SGVTSSSSHS PARAREDPPG DGDPHLSPRR HSNSNSIPLP  60
SRRLPLRSPP PRGERRLGEG PARSDGMQPR PEDAMEEVEA EAAPKAAAGP ELGFWLAARR  120
RLTPDDPFFA AGDLERELLA KHVALDLSED DRNQLEKMEV ASTCTVFCPI AGCGAHLDCL  180
EDFEDHYVTR HTASCSVCSR VYPTSRLLSI HVSEAHDSYF QAKVARGFPM YECLVEGCGV  240
KLKSYKSRQQ HLIDKHQFPK SFEFFKKARP SQRHRQKSQR RQTAHKGEET RDNLMDVDGK  300
GTSQTNWRYR PKQHDHKESK GNERQHQEVK ENEMEVEQKI DELISAVSKL STADSTPANV  360
TFGHRRSRGL TFVPRAIRQN KQAASQPEAK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G125400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979315.10.0zinc finger protein 511
TrEMBLA0A368S8P10.0A0A368S8P1_SETIT; Uncharacterized protein
STRINGSi026682m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.12e-91zinc ion binding;nucleic acid binding;zinc ion binding