PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.8G125400.2.p

Common Name

LOC101759687, SETIT_026682mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 305aa MW: 34606.8 Da PI: 7.8349

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.8G125400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	108	130	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H Seita.8G125400.2.p 108 SCSVCSRVYPTSRLLSIHVSEaH 130 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	8.7	80	105	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	82	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	5.4	107	130	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	109	130	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.33	145	170	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	147	170	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MQPRPEDAME EVEAEAAPKA AAGPELGFWL AARRRLTPDD PFFAAGDLER ELLAKHVALD 60 LSEDDRNQLE KMEVASTCTV FCPIAGCGAH LDCLEDFEDH YVTRHTASCS VCSRVYPTSR 120 LLSIHVSEAH DSYFQAKVAR GFPMYECLVE GCGVKLKSYK SRQQHLIDKH QFPKSFEFFK 180 KARPSQRHRQ KSQRRQTAHK GEETRDNLMD VDGKGTSQTN WRYRPKQHDH KESKGNERQH 240 QEVKENEMEV EQKIDELISA VSKLSTADST PANVTFGHRR SRGLTFVPRA IRQNKQAASQ 300 PEAK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.8G125400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004979315.1	0.0	zinc finger protein 511
TrEMBL	A0A368S8P1	0.0	A0A368S8P1_SETIT; Uncharacterized protein
TrEMBL	K3ZJC9	0.0	K3ZJC9_SETIT; Uncharacterized protein
STRING	Si026682m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	9e-93	zinc ion binding;nucleic acid binding;zinc ion binding

Link Out ? help Back to Top
Phytozome	Seita.8G125400.2.p
Entrez Gene	101759687