PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.8G149900.1.p

Common Name

SETIT_027897mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 164aa MW: 19642.3 Da PI: 9.5549

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.8G149900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.8	2.7e-16	30	116	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +f+n++A++ GFs r + ++++ + ++r++vCskeg +++ + ++ +rr+r++tr +C +++++ + + w+v+k HnH++ Seita.8G149900.1.p 30 EFFNAFARNKGFSGRGRLHTQQ----TKMSRQYVCSKEGAGQPKFLNrETMKRRPRPVTRFDCPFEVVMRHKPeMNIWYVHKYLYTHNHNF 116 6************9988777....4589*******9997775688999************999899***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-14	30	116	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MPAHTQTLEE LEEYEYIVER TFHSEDEGYE FFNAFARNKG FSGRGRLHTQ QTKMSRQYVC 60 SKEGAGQPKF LNRETMKRRP RPVTRFDCPF EVVMRHKPEM NIWYVHKYLY THNHNFRASE 120 KRNILAYQTA GLRKYQIMDV MEKQYGGPHN VGYVIKDLYN FHF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.8G149900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	K3ZMS7	1e-120	K3ZMS7_SETIT; Uncharacterized protein
STRING	Si027897m	1e-121	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-12	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Seita.8G149900.1.p