PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G159000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 123aa    MW: 13817.8 Da    PI: 10.9331
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G159000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.31.8e-1292121128
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGl 28 
                         C+ Cg ++  Tp++Rrgp+g +t CnaCGl
  Seita.8G159000.1.p  92 CAKCGESSeaTPMMRRGPNGYRTFCNACGL 121
                         *****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132010.003127IPR010399Tify domain
PfamPF062001.0E-5321IPR010399Tify domain
PfamPF062031.6E-112972IPR010402CCT domain
PROSITE profilePS510178.6612972IPR010402CCT domain
SuperFamilySSF577161.24E-685121No hitNo description
PROSITE profilePS501148.53786122IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.2E-1191121IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.4E-1092121IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MTYQGKAYVF DSVPPQKVQP IVVPRDFDRT AAVSRYREKR KSTLKFDVKA DYSIRREIAS  60
RIARRRGKFV SSDKSSDNSV AAAARRRQRE SCAKCGESSE ATPMMRRGPN GYRTFCNACG  120
LI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G159000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828797.13e-49GATA transcription factor 20-like
SwissprotQ0DNU19e-27GAT19_ORYSJ; GATA transcription factor 19
TrEMBLA0A368S8955e-83A0A368S895_SETIT; Uncharacterized protein
STRINGSi027518m3e-63(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158801213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.29e-16ZIM-LIKE 2