PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G174800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 675aa    MW: 75120.7 Da    PI: 4.8474
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G174800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049361383323
                         ETTTT.EEESSHHHHHHHHHH.T CS
             zf-C2H2   3 CpdCg.ksFsrksnLkrHirt.H 23 
                         Cp+C+ k F  + +L +H+ + H
  Seita.8G174800.1.p 361 CPICDrKKFVESGLLLSHMCNkH 383
                         *******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.101.6E-113126IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF484528.43E-754108IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.101.6E-11200267IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF484528.43E-7215262IPR011990Tetratricopeptide-like helical domain
PfamPF047802.4E-11306393IPR006865Domain of unknown function DUF629
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MDAALARARA LMLANQGSAV AHRLLGELHY SAAVRAACGE GTPGERKAAA APHLRVARDA  60
LAEARRLAPD CVDVAAALGD ALAASRMYAE AEAEFRRAQT IRRPSDPALH NAAYGMYEGY  120
EHERDPAFAG ERVREARGRA RASYARMTVE ELLPIAVRKV LDAGRQLGAA EGRKRAKLVA  180
ETFPNLARAQ HLQAYMDLEF VRSLDAAIDK RPFLRRTLAM AERAARAFPR SPVIASFHAR  240
LLFVLGEYDA AERECRRALD MKEPDDPQMD CIPAWSIGGE NRGARLVSLA CEFHELLNKI  300
LVAASDYWDS MSGESQRDGF LRLRFDVLQD EYRKVDRSCA FAMSDVRSFV EEHKAWRFWD  360
CPICDRKKFV ESGLLLSHMC NKHPRAVLPR LQSLLDRTTL GDEALESDDS LDGVTFCEDS  420
AEQDMICFSK SSDVFKWLFY APSSGVGAKP FPELLEQKRE KGCMLLESIK DKLKTLPADK  480
SSTEFSEALP RIRELWNEFL KASVLDYRGA ILTLARSFLW RELKKCMTED PELAAKKISA  540
TDIDAVFTKE VEPSRAEEDR ETGDNKQPSQ ADGALMVSGD YEESDVDVKD ESYEKPENNM  600
ESSDPAISVA EGNNDLYAKL DILDIDAKIS ENNQESEVQV EGESSVAMVT NTELSDPATN  660
MAESRNDLDA KSNF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G174800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980687.10.0uncharacterized protein LOC101765117
TrEMBLA0A368S9290.0A0A368S929_SETIT; Uncharacterized protein
STRINGSi027751m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138944