PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G176500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 471aa    MW: 50748.5 Da    PI: 5.2044
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G176500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.51.6e-20111383127
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkklelee..vikevdiykvePwdLp.k.kvka.eekewyfFskrdkkya....tgkrknratksgyWk 84 
                         +GfrF+Pt  e  ++yL + v+g +l+++   vi+++d+y +eP dL  + +    ++ + +fF++ + +++    + +r++ra+ sg W+
  Seita.8G176500.1.p  11 RGFRFNPTPLESATYYLPRLVAGAPLHEAVrpVINHADVYGCEPADLArQfC-PLpRTGHRFFFTHCKLQQPqregKASRATRAAGSGSWH 100
                         7************************55532226**************83332.222455789999888777733334558888888***** PP

                 NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         ++   k+v+++ g +vg  + L +     + g  tdW+m+ey+
  Seita.8G176500.1.p 101 SQSV-KDVVDHAGVKVGEIRKLRYK----KGGAYTDWLMDEYS 138
                         9977.66667699***********8....456789*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.1889159IPR003441NAC domain
SuperFamilySSF1019419.55E-249159IPR003441NAC domain
PfamPF023651.4E-1111138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MAAPVPVIFS RGFRFNPTPL ESATYYLPRL VAGAPLHEAV RPVINHADVY GCEPADLARQ  60
FCPLPRTGHR FFFTHCKLQQ PQREGKASRA TRAAGSGSWH SQSVKDVVDH AGVKVGEIRK  120
LRYKKGGAYT DWLMDEYSCC LEDAVAGDRQ FVLCNIYVSP RADQGSAARQ ESAAFFAPPA  180
PAPVAIAQAA APKRPAPQSA EPPCPKRMRG AVAPTPPVVQ PAGYCTASFA PPLPYVPHIT  240
TSVQPPPPPV LTRLAAPPPS RSLEPAPPLT PPVVRSCHMP PVPTRLAAPP PSRSPAPTPL  300
QPRSLPKQQA PPATLPVQQA PPATLPVVRA CHMPVEAPAR HCQPPQPSVQ RKQRTRDPFE  360
AAELGDEAEE AAPDPKESPA ALVDQEDDWA ELEKCMDDAV PTAEGSTMTE DEMDQHLSSL  420
LFEESPAALV DQEDDWAELE KCMDDAAPTA EGSTMTEDEM DQHLSSLLFE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G176500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703694.10.0uncharacterized protein LOC101768364
TrEMBLA0A368S8U70.0A0A368S8U7_SETIT; Uncharacterized protein
STRINGSi027418m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-09NAC domain containing protein 57