PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G182900.1.p
Common NameSETIT_028206mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 209aa    MW: 22047.1 Da    PI: 6.5212
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G182900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.88.9e-11437942
                        HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        r  t+ +R + ++KKA+EL  L +aev+v+++ s
  Seita.8G182900.1.p  4 RRATYERRCQSLMKKASELAALPGAEVCVVVYDS 37
                        788****************************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.54148IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-12385IPR002100Transcription factor, MADS-box
PfamPF003191.2E-10337IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MATRRATYER RCQSLMKKAS ELAALPGAEV CVVVYDSEDA GAAAAQPEVW PSAEEAARLF  60
RKLKAMPEGR FKKTMSQLQF LQNRVSKVRE QVKKSAVVNG ELESSALLHE CVAGRRPGLV  120
GVTEKELAGL MDLVEAKMSK VRARLQQLGV GEGAHPRAAP PMENGGELGA VFCSAFEGGD  180
GAGPSGSGCE AIEASNQGCD LGSPWAQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G182900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980716.11e-149agamous-like MADS-box protein AGL80
TrEMBLA0A368S9581e-148A0A368S958_SETIT; Uncharacterized protein
STRINGSi028206m1e-148(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2764333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.17e-16AGAMOUS-like 36