PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G017800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 718aa    MW: 78864.3 Da    PI: 4.5592
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G017800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.26.1e-102512532127
                 NAM  32 evikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgk....rknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115
                         ++++++d++++ P+dL +  + + +++ wyf++ ++ k+++g+    r++  a+++  W++    kev+   +e  g+   L + +++ ++
  Seita.9G017800.1.p  25 HFVHHADVCSAAPEDLVTdlEPAPGTSVWYFYCVKKYKSTHGRpgghRQRAiAASDTCWHSEAGAKEVKG--SEGGGTVCHLSYGRKDGRS 113
                         46999***********74233344778*********9999644444266556677999**********88..666799999****999999 PP

                 NAM 116 gektdWvmheyr 127
                          ++  W+m ey 
  Seita.9G017800.1.p 114 FSRLGWCMMEYD 125
                         9**********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.5451141IPR003441NAC domain
SuperFamilySSF1019414.32E-1421141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MAAEDTGDDA SIALLHRLRA GATVHFVHHA DVCSAAPEDL VTDLEPAPGT SVWYFYCVKK  60
YKSTHGRPGG HRQRAIAASD TCWHSEAGAK EVKGSEGGGT VCHLSYGRKD GRSFSRLGWC  120
MMEYDDATGG SDYVLCKIYR SPRAQVKPSS AASKTSKRKA GGEHPEARPV KLFHEQDTFF  180
FTDDYAVPST VAQVNVGGEE EQHCRSMLPA EEHCVDLDFL DHDVLPLTDD EMAILESLLP  240
AEEQQFLQHN TQPPLPAEEQ QFLQHNTQSL LPAEEQQFLQ HNTQPPLPAE DQQFLQHTTQ  300
SLLPAEEQQF LQHNTQPPLP AEEQQFLQHN TQPPLPVEEQ QFLQHNTQSL LAAEEQQFQF  360
EDSTQFTIGK LLGDDVNDTF LTYDYALPST VAQVNVGGEE EQHLSTQDGE FVETWYGLLP  420
SDVAQVNVEE WIRGMEMFGD EEEQHSSKPE QDDGSVKVAP PMTEDITVED YLLAPETTSG  480
EASGMPATFT PPDADLLDVL ERDSEFRVLQ EQQTLQMQEA HAAEPDPMAE FTRVNVVLAA  540
EDLAADVREA LVPRHRPHLP VLPHRQPLDG ARAVQIRRTE DAVILVRQAP ELDAATAHRH  600
GGGWRPMSGA PSGAWWSTLA GTSTEDAGNV VTASFERRTV LWASVRGGAG SYLVVAASPG  660
FLLPAAGALL RVPSLASHRT IASCSENNVG TAVRLTAAPA RHGVQRRRHP CDDPGGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G017800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368SC540.0A0A368SC54_SETIT; Uncharacterized protein
STRINGSi038820m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4574632