PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G024100.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 345aa    MW: 37154.1 Da    PI: 5.7325
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G024100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.51.2e-14111547127
                 NAM   7 FhPt.deelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknra............ 77 
                         F P+ d  l++ yL++k++gk+++    ++++d++  +P dL +       + +++ + w+fFs+++     g +++              
  Seita.9G024100.1.p  11 FCPSnDRRLIDGYLRPKIAGKNVSS-AYVHDADVCLDHPYDLVRghtpapgTGDGDGRAWFFFSPERYVGGGGGKTSARgggsrpghrara 100
                         66743889**************998.78**************74456666544457789******99888765544443478889999999 PP

                 NAM  78 ......tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmheyr 127
                                k+g+W+a gk+++v     +  g  ++L++++  +p+g+  k  W+m ey 
  Seita.9G024100.1.p 101 vvgadgKKKGTWHAEGKKEAVAG---SGGGYCRSLTYHEM-TPSGSfvKPGWLMVEYG 154
                         99999989*********999988...3459999*****64.44444349********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.566173IPR003441NAC domain
PfamPF023655.1E-1111154IPR003441NAC domain
SuperFamilySSF1019418.89E-2315173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MECPEDHNDE FCPSNDRRLI DGYLRPKIAG KNVSSAYVHD ADVCLDHPYD LVRGHTPAPG  60
TGDGDGRAWF FFSPERYVGG GGGKTSARGG GSRPGHRARA VVGADGKKKG TWHAEGKKEA  120
VAGSGGGYCR SLTYHEMTPS GSFVKPGWLM VEYGVDDEDG GGGGVVLCKV YKSRRGPGSN  180
VPSRKRKADV EAPSASSFLS RQRRTHHDDD AMSCNKAAPQ RQETELVRYQ GTEQVHGGDP  240
HPGDADAFTM LRAFMETDED ENALQLPANF DPVKYLLGEH QPGPGNTILE ELMGSSAPVQ  300
CSATPSSLLF DNDVCAAWRF DSAYLESGEE VHQLPCLDAL VQRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G024100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368SCB80.0A0A368SCB8_SETIT; Uncharacterized protein
STRINGSi038929m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62801545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.33e-07NAC transcription factor-like 9