PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G084700.2.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 163aa MW: 18414.4 Da PI: 7.2194

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G084700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.5	5.1e-14	26	88	29	91
FAR1 29 tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 + +fvC keg+r+++k++ + ++ +raetrt+C+ +++k+++ ++ +v +l+leHnH+l p Seita.9G084700.2.p 26 FWLRFVCAKEGRRSQDKRD-HLTKCPRAETRTECQIYMNLKMDRkKEIQKVPELVLEHNHALHP 88 5679**********999.999***************9989999**********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-10	25	88	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MIQIQLLGLL PQVGMEFSTS DEAWAFWLRF VCAKEGRRSQ DKRDHLTKCP RAETRTECQI 60 YMNLKMDRKK EIQKVPELVL EHNHALHPPE TLHLMVSQRL HLILMEQRRL LFLLRWCGHL 120 GVAGYLPRGG AALGVAVAGI LDGGGCSSEP YHFVIVDDDG NE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G084700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981694.1	1e-118	protein FAR1-RELATED SEQUENCE 5 isoform X3
Refseq	XP_022678701.1	1e-118	uncharacterized protein LOC101769320 isoform X1
TrEMBL	A0A368SEK3	1e-117	A0A368SEK3_SETIT; Uncharacterized protein
STRING	BRADI2G59232.1	4e-35	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-09	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Seita.9G084700.2.p