PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G115200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 317aa    MW: 36222 Da    PI: 5.6568
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G115200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.22.7e-181821090
                FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                        +GF+vr++ s  s ++g++++ +f+C+keg +++e+++ ++k++r+ra t+ gCka++++ k++++kw+v+kl l H+Hela
  Seita.9G115200.1.p  1 MGFEVRIRLSCCSPKDGTFVMWRFNCTKEGADSREENNnENKRKRNRAATKEGCKASFEIVKREQDKWVVSKLFLAHTHELA 82
                        7*****************************99988887467778899*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.7E-17182IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGFEVRIRLS CCSPKDGTFV MWRFNCTKEG ADSREENNNE NKRKRNRAAT KEGCKASFEI  60
VKREQDKWVV SKLFLAHTHE LAAVQDEVHY IQSNSEVVVL AKTSVLQGNW IAPTMNPQLG  120
ELGRNFEELS PNNQEMIEPC RCDFGLDDTQ KLLGYFKRLN TENPTFSYAF QVDKNDCLTH  180
AFWADAKVRT SYCYFGDGVR LETSFVENDD VLPLVLLTAM GSHHPTSLAT SYNEAIGSAA  240
AKVFPQTHLL YCTSQILNRC KENLVNVYSR CASFEEEFVV CIHEPETTEI FESSWKKILD  300
KFDLAANLWL QYLYRI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G115200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650502.11e-156PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_015691162.11e-156PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A368SFQ90.0A0A368SFQ9_SETIT; Uncharacterized protein
STRINGOB03G39100.11e-155(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-41FAR1-related sequence 5