PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G137000.2.p
Common NameLOC101783497, SETIT_039749mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 312aa    MW: 35125.8 Da    PI: 6.0034
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G137000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.41.9e-325982102
                         HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
        HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                         F+ k+ye++ d++++ ++sw     gnsfvv+d++ ++  +Lp++Fkh nfaSF+RQLn+YgF+kv+ ++         weF+h+sF +g+
  Seita.9G137000.2.p   5 FVAKTYEMVADAATDAVVSWApgGAGNSFVVWDPQALSVGLLPRFFKHANFASFIRQLNIYGFRKVNPDR---------WEFAHESFLAGQ 86 
                         9********************55556*****************************************999.........************ PP

                         XXXXXXXXXXXX CS
        HSF_DNA-bind  91 kellekikrkks 102
                         k+ll+kikr++ 
  Seita.9G137000.2.p  87 KHLLRKIKRRRA 98 
                         *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.2E-51196IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.8E-34296IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.67E-30396IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-28596IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-17528IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-174557IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404670IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-175870IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MPAPFVAKTY EMVADAATDA VVSWAPGGAG NSFVVWDPQA LSVGLLPRFF KHANFASFIR  60
QLNIYGFRKV NPDRWEFAHE SFLAGQKHLL RKIKRRRAPK PQMEAHPRNG ASICFKQPKD  120
SGEVESLKRD RAALRAEVLT LKQQYSSCKS QLVALEERIL NNERNQQKAI AFFAKVLSNP  180
TFVQQVLLNY AANKELYSTA KRKRLMENEE QRVGTLKNGL EPTLATEASA SAASSDGSVV  240
AKHEPMPEWN YQEMDNIWED VWDELDAIPG AEMDQEDKAA AGFEVEEFTG RPCGWVDDCP  300
YLVEQMQFVE H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-2259620120Heat shock factor protein 1
5d5u_B5e-2259629129Heat shock factor protein 1
5d5v_B5e-2259629129Heat shock factor protein 1
5d5v_D5e-2259629129Heat shock factor protein 1
5hdg_A3e-221967110Heat shock factor protein 1
5hdn_A3e-221967110Heat shock factor protein 1
5hdn_B3e-221967110Heat shock factor protein 1
5hdn_C3e-221967110Heat shock factor protein 1
5hdn_D3e-221967110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G137000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0695721e-164BT069572.1 Zea mays full-length cDNA clone ZM_BFb0177O03 mRNA, complete cds.
GenBankHQ8587241e-164HQ858724.1 Zea mays clone UT1392 HSF transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982151.10.0heat stress transcription factor A-6a
SwissprotQ657C01e-151HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLK4ALG80.0K4ALG8_SETIT; Uncharacterized protein
STRINGSi039749m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-72heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]