PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G154300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family YABBY
Protein Properties Length: 196aa    MW: 21867.1 Da    PI: 8.8782
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G154300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2351.7e-7251692170
               YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlks.nvekees 91 
                         +++ + e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+   q l++++hl       ++e+lkv++ ++++ n+ ++  
  Seita.9G154300.1.p   5 QIVPALEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSLPVQNHLCL----LVQENLKVHNFSFSTeNYCEYAP 91 
                         567788*******************************************************654....57788888888876415666666 PP

               YABBY  92 astsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         +s++ ++ ++ s++ d++  ++ +v   PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl
  Seita.9G154300.1.p  92 SSSKYRMPTMfSTKGDQD--HMLHVRAAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 169
                         666666666644444433..34567889**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.9E-6911169IPR006780YABBY protein
SuperFamilySSF470954.84E-7116163IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.3E-4118163IPR009071High mobility group box domain
CDDcd000844.07E-4123159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSAPQIVPAL EHVCYVHCNF CNTILAVSVP SNSMLNIVTV RCGHCTSLLS VNLRGLIQSL  60
PVQNHLCLLV QENLKVHNFS FSTENYCEYA PSSSKYRMPT MFSTKGDQDH MLHVRAAPEK  120
RQRVPSAYNR FIKEEIRRIK ASNPAISHRE AFSTAAKNWA HFPNIHFGLG PLESSKKLDE  180
AIGAAGHPHK VQDLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G154300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982272.11e-143protein YABBY 2
SwissprotQ10FZ71e-102YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A368SGU31e-144A0A368SGU3_SETIT; Uncharacterized protein
STRINGPavir.Ia01130.1.p1e-117(Panicum virgatum)
STRINGSi037789m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.29e-58YABBY family protein