PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G154300.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family YABBY
Protein Properties Length: 154aa    MW: 17367.8 Da    PI: 8.9085
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G154300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY25.44.4e-08527224
               YABBY  2 dvfssseqvCyvqCnfCntilav 24
                        +++ + e+vCyv+CnfCntila+
  Seita.9G154300.2.p  5 QIVPALEHVCYVHCNFCNTILAL 27
                        567788***************85 PP
2YABBY129.44.9e-402912772170
               YABBY  72 leelkveeenlks.nvekeesastsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                         +e+lkv++ ++++ n+ ++  +s++ ++ ++ s++ d++  ++ +v   PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknW
  Seita.9G154300.2.p  29 QENLKVHNFSFSTeNYCEYAPSSSKYRMPTMfSTKGDQD--HMLHVRAAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNW 117
                         688888888876415666666777777766644444333..44568889****************************************** PP

               YABBY 161 ahfPkihfgl 170
                         ahfP+ihfgl
  Seita.9G154300.2.p 118 AHFPNIHFGL 127
                         ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.5E-51127IPR006780YABBY protein
PfamPF046906.6E-3750127IPR006780YABBY protein
SuperFamilySSF470953.14E-774121IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.5E-476121IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MSAPQIVPAL EHVCYVHCNF CNTILALVQE NLKVHNFSFS TENYCEYAPS SSKYRMPTMF  60
STKGDQDHML HVRAAPEKRQ RVPSAYNRFI KEEIRRIKAS NPAISHREAF STAAKNWAHF  120
PNIHFGLGPL ESSKKLDEAI GAAGHPHKVQ DLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G154300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982272.11e-102protein YABBY 2
SwissprotQ10FZ72e-68YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A368SGY81e-112A0A368SGY8_SETIT; Uncharacterized protein
STRINGSi037789m3e-87(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-38YABBY family protein