PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G154300.3.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family YABBY
Protein Properties Length: 153aa    MW: 17296.7 Da    PI: 8.9085
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G154300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY25.63.9e-08527224
               YABBY  2 dvfssseqvCyvqCnfCntilav 24
                        +++ + e+vCyv+CnfCntila+
  Seita.9G154300.3.p  5 QIVPALEHVCYVHCNFCNTILAL 27
                        567788***************85 PP
2YABBY130.12.9e-402912672170
               YABBY  72 leelkveeenlk.snvekeesastsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                         +e+lkv++ +++ +n+ ++  +s++ ++ ++  ++ +++++ +    +r PekrqrvPsaynrfikeei+rikasnP ishreafs+aakn
  Seita.9G154300.3.p  29 QENLKVHNFSFStENYCEYAPSSSKYRMPTMfsTKGDQDHMLH----VRAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKN 115
                         6788888888751456667777777777666533344455554....89****************************************** PP

               YABBY 160 WahfPkihfgl 170
                         WahfP+ihfgl
  Seita.9G154300.3.p 116 WAHFPNIHFGL 126
                         *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-3751126IPR006780YABBY protein
SuperFamilySSF470951.38E-770120IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.3E-572120IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MSAPQIVPAL EHVCYVHCNF CNTILALVQE NLKVHNFSFS TENYCEYAPS SSKYRMPTMF  60
STKGDQDHML HVRAPEKRQR VPSAYNRFIK EEIRRIKASN PAISHREAFS TAAKNWAHFP  120
NIHFGLGPLE SSKKLDEAIG AAGHPHKVQD LY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G154300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982272.11e-104protein YABBY 2
SwissprotQ10FZ73e-70YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A368SGV81e-111A0A368SGV8_SETIT; Uncharacterized protein
STRINGSi037789m4e-89(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.24e-40YABBY family protein