PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G154300.4.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family YABBY
Protein Properties Length: 151aa    MW: 17027.3 Da    PI: 8.9085
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G154300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY26.42.1e-08529226
               YABBY  2 dvfssseqvCyvqCnfCntilavsv 26
                        +++ + e+vCyv+CnfCntila ++
  Seita.9G154300.4.p  5 QIVPALEHVCYVHCNFCNTILAENL 29
                        567788***************9775 PP
2YABBY129.15.7e-402612472170
               YABBY  72 leelkveeenlk.snvekeesastsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                         +e+lkv++ +++ +n+ ++  +s++ ++ ++ s++ d++  ++ +v   PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknW
  Seita.9G154300.4.p  26 AENLKVHNFSFStENYCEYAPSSSKYRMPTMfSTKGDQD--HMLHVRAAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNW 114
                         577888887775145666666667777766644444433..44568889****************************************** PP

               YABBY 161 ahfPkihfgl 170
                         ahfP+ihfgl
  Seita.9G154300.4.p 115 AHFPNIHFGL 124
                         ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.0E-51129IPR006780YABBY protein
PfamPF046901.0E-3650124IPR006780YABBY protein
SuperFamilySSF470953.14E-771118IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.4E-473118IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MSAPQIVPAL EHVCYVHCNF CNTILAENLK VHNFSFSTEN YCEYAPSSSK YRMPTMFSTK  60
GDQDHMLHVR AAPEKRQRVP SAYNRFIKEE IRRIKASNPA ISHREAFSTA AKNWAHFPNI  120
HFGLGPLESS KKLDEAIGAA GHPHKVQDLY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G154300.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982272.16e-96protein YABBY 2
SwissprotQ10FZ71e-66YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A368SGU41e-109A0A368SGU4_SETIT; Uncharacterized protein
STRINGSi037789m1e-86(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.23e-39YABBY family protein