PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G154300.5.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family YABBY
Protein Properties Length: 150aa    MW: 16956.3 Da    PI: 8.9085
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G154300.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY26.61.8e-08529226
               YABBY  2 dvfssseqvCyvqCnfCntilavsv 26
                        +++ + e+vCyv+CnfCntila ++
  Seita.9G154300.5.p  5 QIVPALEHVCYVHCNFCNTILAENL 29
                        567788***************9775 PP
2YABBY129.35.2e-402712373170
               YABBY  73 eelkveeenlk.snvekeesastsvssekl.sen.edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                         e+lkv++ +++ +n+ ++  +s++ ++ ++ s++ +++++ +    +r PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknW
  Seita.9G154300.5.p  27 ENLKVHNFSFStENYCEYAPSSSKYRMPTMfSTKgDQDHMLH----VRAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNW 113
                         566777766641456666666677777666544404445554....89******************************************* PP

               YABBY 161 ahfPkihfgl 170
                         ahfP+ihfgl
  Seita.9G154300.5.p 114 AHFPNIHFGL 123
                         ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.3E-51129IPR006780YABBY protein
PfamPF046901.0E-3751123IPR006780YABBY protein
SuperFamilySSF470951.42E-767117IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.0E-569117IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MSAPQIVPAL EHVCYVHCNF CNTILAENLK VHNFSFSTEN YCEYAPSSSK YRMPTMFSTK  60
GDQDHMLHVR APEKRQRVPS AYNRFIKEEI RRIKASNPAI SHREAFSTAA KNWAHFPNIH  120
FGLGPLESSK KLDEAIGAAG HPHKVQDLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G154300.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982272.11e-97protein YABBY 2
SwissprotQ10FZ72e-68YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A368SGV01e-109A0A368SGV0_SETIT; Uncharacterized protein
STRINGSi037789m2e-88(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.29e-41YABBY family protein