PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G159900.1.p
Common NameSETIT_037185mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LSD
Protein Properties Length: 176aa    MW: 18345.2 Da    PI: 8.5494
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G159900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1413.2e-13731125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+ Crt+L YPrGApsV+CalC++V
  Seita.9G159900.1.p  7 CHACRTVLLYPRGAPSVCCALCQAV 31
                        ************************9 PP
2zf-LSD139.96.7e-134670125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        CggCrtlL+Y+r A  VRC++C+tV
  Seita.9G159900.1.p 46 CGGCRTLLMYTRSADTVRCSCCNTV 70
                        ************************9 PP
3zf-LSD146.17.8e-1584108125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg C+t+L+YP+GA sV+Ca+C++V
  Seita.9G159900.1.p  84 CGRCQTTLMYPYGAHSVKCAICNHV 108
                         ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.9E-13434IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-10731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.3E-154373IPR005735Zinc finger, LSD1-type
PfamPF069437.9E-114670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.9E-1181109IPR005735Zinc finger, LSD1-type
PfamPF069433.9E-1384108IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MQNQIVCHAC RTVLLYPRGA PSVCCALCQA VTTVPPPGLD MAQLICGGCR TLLMYTRSAD  60
TVRCSCCNTV NLVRPVNNIA HVNCGRCQTT LMYPYGAHSV KCAICNHVTA TGVNTVAPTT  120
SARPASNGPS YSTSSTSAPK SQPQNVTVVV ENPMTVDDKG KLVSNVVVGV TTGKN*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G159900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9764860.0EU976486.1 Zea mays clone 895962 zinc finger protein LSD2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982348.11e-123protein LOL3
SwissprotQ6ASS23e-93LOL3_ORYSJ; Protein LOL3
TrEMBLK4AE781e-122K4AE78_SETIT; Uncharacterized protein
STRINGSi037185m1e-123(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.74e-53LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]