PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G165800.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family G2-like
Protein Properties Length: 289aa    MW: 31197.1 Da    PI: 11.0613
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G165800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.88.9e-32140193255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Seita.9G165800.2.p 140 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 193
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-15137193IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28137193IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-23140193IPR006447Myb domain, plants
PfamPF002492.0E-7141192IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSYATHDLIT KIHFSSNKNR HSSILNLEVP HKLAMAATAA ATDLSLHISP PSPADAGSSG  60
GGGGEAYHET EGFFAAKPKL CLGLETATAQ QDGQSDTQQQ RLHQPSQIQR FKKSSPAALS  120
GGTTRSGNGS GGGKRSSRAP RMRWTTALHA HFVHAVELLG GHERATPKSV LELMNVKDLT  180
LAHVKSHLQM YRTVKGTTAD RSCAAGHVQM RDMGFLQRGC EVNGFEAFNH ITTSNTRDGG  240
EVRSKTSWVR TTWHGVCTQA LLTRPSGDRI GAQVSRAAGR RRRCLRRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-17141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-17141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-17141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-17141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-17141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-17141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-17141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-17141195458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G165800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0373981e-120BT037398.1 Zea mays full-length cDNA clone ZM_BFb0167O11 mRNA, complete cds.
GenBankKJ7268281e-120KJ726828.1 Zea mays clone pUT3368 G2-like transcription factor (GLK23) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982402.11e-159uncharacterized protein LOC101779847
TrEMBLA0A368SHB70.0A0A368SHB7_SETIT; Uncharacterized protein
STRINGPavir.Ia01264.1.p1e-102(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.11e-33G2-like family protein