PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G166400.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 331aa    MW: 38039.7 Da    PI: 9.6663
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G166400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.93.3e-2227115198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv+   d +++ rl +p kf++++ g     kt++le+++g +++v++  +k+ g++vl++GWk Fv a++Lk gDf+vF++dg+s+  
  Seita.9G166400.2.p  27 FFKVM--TDDFSE-RLGIPDKFVQHFRGR--IAKTVKLESRTGCTFNVEV--TKSLGKVVLQTGWKAFVCAHDLKMGDFLVFRYDGTSRL- 109
                         88999..777766.5********777766..6679***************..********************************996666. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                          +v +f+
  Seita.9G166400.2.p 110 -KVWIFD 115
                         .888886 PP
2B350.73.3e-162433281398
                         TT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  13 sgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          + + +++++a+ +       e++t  l + +g+sWev +++   + +sg+  l+kGWk+F+++n+L+ gD ++F+l ++++ +++v+++r
  Seita.9G166400.2.p 243 PQTMDISREYADVYlpF----EDQT-LLLQHRGKSWEVGCRInihKSNSGTKRLSKGWKQFARDNNLQLGDLCLFELLENKKYTMNVHIIR 328
                         46688889999777542....2334.55666*********887778888889**************************99********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-2520119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-2522124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.05624117IPR003340B3 DNA binding domain
CDDcd100171.05E-2425115No hitNo description
SMARTSM010197.8E-1327117IPR003340B3 DNA binding domain
PfamPF023627.1E-2027115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-21224328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-20225328IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-8230330IPR003340B3 DNA binding domain
PROSITE profilePS5086313.437231330IPR003340B3 DNA binding domain
CDDcd100173.89E-16233328No hitNo description
PfamPF023624.7E-14244328IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MRKPGKKCKE RDAYHHWNHS DEQERYFFKV MTDDFSERLG IPDKFVQHFR GRIAKTVKLE  60
SRTGCTFNVE VTKSLGKVVL QTGWKAFVCA HDLKMGDFLV FRYDGTSRLK VWIFDLSCCE  120
KMPPCHVMRS PIRGGGKGEE QIEISRSCDD LPMESTEIKS KAWKQREGSM NLNTSSTSSS  180
DSSGDSLSPE DQKSHSVPSY ILPQRTYLTC VQKKKLKERV RAICSKTPIY GCVMKKSSID  240
AKPQTMDISR EYADVYLPFE DQTLLLQHRG KSWEVGCRIN IHKSNSGTKR LSKGWKQFAR  300
DNNLQLGDLC LFELLENKKY TMNVHIIRIK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G166400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982411.10.0putative B3 domain-containing protein Os03g0621600 isoform X2
SwissprotQ851V51e-104Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A368SHK20.0A0A368SHK2_SETIT; Uncharacterized protein
STRINGSi039093m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-21B3 family protein