PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G166600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 341aa    MW: 39196.6 Da    PI: 6.4386
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G166600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.65.4e-142573341798
                         E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                  B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                          +pk+++ +h g ke+    ++ ++++++++ kl  + +  + + ++GW++Fvkang+++gD+++F+l ++ ++ +++v+++r
  Seita.9G166600.1.p 257 NFPKQYIVRHLGRKER---TIFLQRDSQRYQAKL--NIGAVAKLSQGGWRRFVKANGIEVGDICLFELLKDgETCTMNVHIIR 334
                         579***99**666655...46677899*******..99999999***********************998889999***9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-1320123IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1122120IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-625119No hitNo description
PROSITE profilePS508637.21881121IPR003340B3 DNA binding domain
SMARTSM010194.4E-4250336IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-12256334IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-14257335IPR015300DNA-binding pseudobarrel domain
PfamPF023627.3E-12258335IPR003340B3 DNA binding domain
PROSITE profilePS508639.939258336IPR003340B3 DNA binding domain
CDDcd100174.86E-12258334No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGSSCRRCKL RAENAYKNLD DHQKYFLMLM KGDFQQAMTI PGELVERFRC EILTQITLRT  60
CNSCALKCNC STVEVAKCPD KIVISAGWAA FVDTYDLHLH GSVLFRYGEN SEFYVVIFDQ  120
FGCEEVLSVL EDYSHLPPHD PERCIDATEA VKCYCPDDIE YVNPPYDHPE SETMQMRSPQ  180
REGHTPLQTD STTQGIKIML HLDVQRTCRD DIESVTPAHE HARTKTMQMR SLPWERQTSL  240
QRDSITQDNK TMPHLDNFPK QYIVRHLGRK ERTIFLQRDS QRYQAKLNIG AVAKLSQGGW  300
RRFVKANGIE VGDICLFELL KDGETCTMNV HIIRSYEVAD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G166600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368SHE10.0A0A368SHE1_SETIT; Uncharacterized protein
STRINGPavir.Ib03967.1.p8e-71(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536