PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G166800.3.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 463aa    MW: 52112.4 Da    PI: 8.1329
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G166800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.2e-143914593099
                         ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         +++++tl+l+   g++We k+ + +++++ ++ +GW +F++ ngL++gD+++F+l+++ +  ++ v+++rk
  Seita.9G166800.3.p 391 PTKGQTLILQC-GGKTWEAKMMFHNGRRW-FINGGWPNFARGNGLRVGDICLFELKKEeKLLTMAVHIIRK 459
                         34555666554.99*******99888877.5899**********************988999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579038.86E-7253IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.0E-6354IPR013083Zinc finger, RING/FYVE/PHD-type
Gene3DG3DSA:2.40.330.102.2E-20354459IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-18355459IPR015300DNA-binding pseudobarrel domain
CDDcd100176.38E-18360458No hitNo description
SMARTSM010196.6E-6362460IPR003340B3 DNA binding domain
PROSITE profilePS5086312.238364460IPR003340B3 DNA binding domain
PfamPF023621.9E-12381459IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MDILCEVCGD IGFRHLLLCC GDCKHSAIHQ YCLEKVVFDA SLIEWFCYEC LQRRGEVTCI  60
RSLEKVPSER PSSNAHFGSI VHQPITKRVE SARDAVPWRN RKRKSFVSKY ASHNKIYSPR  120
KKHAKNKSNM PYSPNDGCEE VFSCSGIKNI PSVQDRSADS IDTSSISQHD ITEPSESSER  180
FTEYQKGSSY PRGKNLKMAA ASSSSEESGE DIPSENVSLA SDDLQSPLGA DYVLSYRTYL  240
SKAQKVRVMT LIQEIQPEFT VYIATMRKTS VQPPGPYLGI TKEYALAHCP DRSTTVTLEM  300
PGEHASQESG TLEIPHESLE SEDSDSLFLP PYFVPCKNLL SKSQKRIVEE RVRAIRSEVP  360
LCVAVMKNNN VGVAQRWMLE LGSRYASVYL PTKGQTLILQ CGGKTWEAKM MFHNGRRWFI  420
NGGWPNFARG NGLRVGDICL FELKKEEKLL TMAVHIIRKE LF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G166800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982416.10.0B3 domain-containing protein Os03g0619800
SwissprotQ6AV215e-37Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A368SHB90.0A0A368SHB9_SETIT; Uncharacterized protein
STRINGSi035278m1e-180(Setaria italica)