PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G166900.1.p
Common NameSETIT_037821mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 100aa    MW: 11295.3 Da    PI: 11.4583
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G166900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.2e-1614931799
                        E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                         l  ++a++h  + +++ + +  +  g++W  ++ + +++++ +l +GW +F+++ngL++gD+++F+l+++ ++ +++v+++++
  Seita.9G166900.1.p 14 ELGVRYAAAHL-P-ASG-QAVALQCMGKTWITQMVIHNGRRW-FLNGGWARFARDNGLRVGDICLFELKKNkRKLTMKVHIISR 93
                        55666676663.2.233.345556689*******77777666.6999**********************999999****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.9E-4194IPR003340B3 DNA binding domain
PROSITE profilePS5086312.492194IPR003340B3 DNA binding domain
CDDcd100172.86E-16792No hitNo description
SuperFamilySSF1019362.16E-171192IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-191293IPR015300DNA-binding pseudobarrel domain
PfamPF023628.3E-151393IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MKNNNGVAQK WMLELGVRYA AAHLPASGQA VALQCMGKTW ITQMVIHNGR RWFLNGGWAR  60
FARDNGLRVG DICLFELKKN KRKLTMKVHI ISREQSSLK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17683LKKNKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G166900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797620.14e-59B3 domain-containing protein Os03g0619800-like isoform X3
SwissprotQ6AV227e-24Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A368SHD64e-67A0A368SHD6_SETIT; Uncharacterized protein
TrEMBLK4AG144e-67K4AG14_SETIT; Uncharacterized protein
STRINGSi037821m7e-68(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-08B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]